nm000469 NEMAR-native dataset

Xie2026 amygdala ablation PTSD: epoched stereo-EEG of the index patient before and after right amygdala radiofrequency ablation (interpretation-bias task)

Epoched stereo-EEG (157 contacts, 200 Hz, 588 trials) from a single patient with post-traumatic stress disorder, recorded during a face interpretation-bias task before and after SEEG-guided radiofrequency ablation of the right amygdala. The data are a BIDS derivative repackaging of the authors' OSF release, including event markers and per-contact anatomical annotations such as amygdala nuclei. The dataset supports analysis of amygdala-related neural activity and interpretation bias in PTSD.

IEEG
Issues GitHub

Download this dataset

Pick a method. Large datasets skip the zip; resume support depends on each file's storage type. Full download guide →

  1. Download archive (.zip) — 0.2 GB

    A single zip of the published version. Best for small/medium datasets.

    Download zip

  2. NEMAR CLI recommended

    Pulls the pinned version + annexed data and resumes cleanly. Install nemar-cli → 

    nemar dataset download nm000469
  3. DataLad

    Clone the dataset repo and fetch file content on demand. Docs → 

    datalad clone https://github.com/nemarDatasets/nm000469 nm000469
cd nm000469 && datalad get .
  4. git-annex

    Plain git + git-annex against the dataset repo. Docs → 

    git clone https://github.com/nemarDatasets/nm000469 nm000469
cd nm000469 && git annex get .
  5. Direct files (wget / curl / rclone)

    Every file is listed by its stable manifest URL. Single-range requests and resume are currently supported for annex-backed entries; git-tracked files are served as full bodies. Real chunk-only byte delivery still awaits isolated, non-synthetic acceptance. Needs curl, jq, wget (or rclone/aria2c). Docs → 

    curl -s https://data.nemar.org/nm000469/v1.0.0/manifest.json | jq -r '.[].url' > urls.txt
wget -xc -i urls.txt

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

  1. NeuroScience Gateway (NSG) portal.

    NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/nm000469), and submit.
    nsgportal.org →

  2. Local processing with nemar-cli.

    Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning. 

    npm install -g nemar-cli
nemar dataset clone nm000469
cd nm000469 && nemar dataset get
  3. Just the files.

    rclone, aria2c, or any HTTPS client works against data.nemar.org/nm000469/ — the manifest carries stable data-plane file URLs. Single-range requests are supported for annex-backed entries; git-tracked files are served as full bodies. Real chunk-only byte delivery remains under isolated acceptance.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

Citations

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    Files

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    Signal viewer
    How to use the data (for agentic research) license, citation, download commands

    What it is

    Modalities
    IEEG
    Participants
    1
    Size
    177 MB
    Tasks
    interpretation

    License and terms

    License
    CC-BY-NC-4.0
    Note
    Non-commercial use only (CC-BY-NC-4.0).
    Recommended citation
    Xie, T., Rooij, S. J. H. V., Sun, S., Bryson, N. K., Demarest, P., Park, H., Maccotta, L., Wang, S., Brunner, P., & Willie, J. T. (2026). Xie2026 amygdala ablation PTSD: epoched stereo-EEG of the index patient before and after right amygdala radiofrequency ablation (interpretation-bias task) (Version v1.0.0) [Data set]. NEMAR. https://doi.org/10.82901/nemar.nm000469

    Where the bytes are

    Latest version (always current)
    https://data.nemar.org/nm000469/latest/
    This version (v1.0.0)
    https://data.nemar.org/nm000469/v1.0.0/

    How to download

    The dataset
    nemar dataset download nm000469 Clones and fetches in one step. Content under stimuli/ and derivatives/ is skipped by default because those trees can be large; add --stimuli --derivatives for the whole thing.
    A subset, one step
    nemar dataset download nm000469 --subjects sub-01,02 Also filters by --sessions, --tasks, --runs, --datatypes, --include and --exclude.
    A subset, step 1
    nemar dataset clone nm000469 Clones git-annex pointers only; fetches no file content. Creates ./nm000469.
    A subset, step 2
    cd nm000469 The get command below reads the clone's annex, so it only works from inside the clone.
    A subset, step 3
    nemar dataset get <files> Pulls the files you actually need. Skips stimuli/ and derivatives/ unless the path you ask for is under one of them.
    One small file
    https://data.nemar.org/nm000469/v1.0.0/participants.tsv A direct HTTPS fetch works for any single file.

    Assess fit without downloading

    Participants table
    https://data.nemar.org/nm000469/v1.0.0/participants.tsv
    Dataset description
    https://data.nemar.org/nm000469/v1.0.0/dataset_description.json
    Directory listing
    https://data.nemar.org/nm000469/v1.0.0/?format=json
    Catalog record
    https://api.nemar.org/datasets/nm000469