nm000464 NEMAR-native dataset

Vanderbilt BIEN Lab Peri-ictal Dynamics Data (Makhoul et al. 2025): per-seizure SEEG partial directed coherence and imaginary coherence

A derivative BIDS-iEEG dataset of per-seizure connectivity results computed from stereo-EEG (SEEG) recordings of patients with drug-resistant epilepsy at Vanderbilt University Medical Center. It provides partial directed coherence and imaginary coherence for peri-ictal windows, with seizure-onset and propagation zone labels, across 994 connectivity files and 708 seizures. The data support analysis of how interictal suppressive networks collapse and permit seizure spread.

IEEG
Issues GitHub

Download this dataset

dataset 1664.8 GB exceeds 100.0 GB archive limit; use direct download. Choose a download method below; resume support depends on each file's storage type. Full download guide →

  1. NEMAR CLI recommended

    Pulls the pinned version + annexed data and resumes cleanly. Install nemar-cli → 

    nemar dataset download nm000464
  2. DataLad

    Clone the dataset repo and fetch file content on demand. Docs → 

    datalad clone https://github.com/nemarDatasets/nm000464 nm000464
cd nm000464 && datalad get .
  3. git-annex

    Plain git + git-annex against the dataset repo. Docs → 

    git clone https://github.com/nemarDatasets/nm000464 nm000464
cd nm000464 && git annex get .
  4. Direct files (wget / curl / rclone)

    Every file is listed by its stable manifest URL. Single-range requests and resume are currently supported for annex-backed entries; git-tracked files are served as full bodies. Real chunk-only byte delivery still awaits isolated, non-synthetic acceptance. Needs curl, jq, wget (or rclone/aria2c). Docs → 

    curl -s https://data.nemar.org/nm000464/v1.0.0/manifest.json | jq -r '.[].url' > urls.txt
wget -xc -i urls.txt

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

  1. NeuroScience Gateway (NSG) portal.

    NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/nm000464), and submit.
    nsgportal.org →

  2. Local processing with nemar-cli.

    Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning. 

    npm install -g nemar-cli
nemar dataset clone nm000464
cd nm000464 && nemar dataset get
  3. Just the files.

    rclone, aria2c, or any HTTPS client works against data.nemar.org/nm000464/ — the manifest carries stable data-plane file URLs. Single-range requests are supported for annex-backed entries; git-tracked files are served as full bodies. Real chunk-only byte delivery remains under isolated acceptance.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

Citations

    Loading demographics…

    Files

    Loading file index…

    Signal viewer
    How to use the data (for agentic research) license, citation, download commands

    What it is

    Modalities
    IEEG
    Participants
    78
    Size
    1.63 TB
    Tasks
    periictal

    License and terms

    License
    CC-BY-NC-SA-4.0
    Note
    Non-commercial use only (CC-BY-NC-SA-4.0).
    Recommended citation
    Makhoul, G., Wang, K., & Englot, D. (2026). Vanderbilt BIEN Lab Peri-ictal Dynamics Data (Makhoul et al. 2025): per-seizure SEEG partial directed coherence and imaginary coherence (Version v1.0.0) [Data set]. NEMAR. https://doi.org/10.82901/nemar.nm000464

    Where the bytes are

    Latest version (always current)
    https://data.nemar.org/nm000464/latest/
    This version (v1.0.0)
    https://data.nemar.org/nm000464/v1.0.0/

    How to download

    The dataset
    nemar dataset download nm000464 Clones and fetches in one step. Content under stimuli/ and derivatives/ is skipped by default because those trees can be large; add --stimuli --derivatives for the whole thing.
    A subset, one step
    nemar dataset download nm000464 --subjects sub-01,02 Also filters by --sessions, --tasks, --runs, --datatypes, --include and --exclude.
    A subset, step 1
    nemar dataset clone nm000464 Clones git-annex pointers only; fetches no file content. Creates ./nm000464.
    A subset, step 2
    cd nm000464 The get command below reads the clone's annex, so it only works from inside the clone.
    A subset, step 3
    nemar dataset get <files> Pulls the files you actually need. Skips stimuli/ and derivatives/ unless the path you ask for is under one of them.
    One small file
    https://data.nemar.org/nm000464/v1.0.0/participants.tsv A direct HTTPS fetch works for any single file.

    Assess fit without downloading

    Participants table
    https://data.nemar.org/nm000464/v1.0.0/participants.tsv
    Dataset description
    https://data.nemar.org/nm000464/v1.0.0/dataset_description.json
    Directory listing
    https://data.nemar.org/nm000464/v1.0.0/?format=json
    Catalog record
    https://api.nemar.org/datasets/nm000464