nm000370 NEMAR-native dataset

Human intraoperative Neuropixels recordings, LF band (Paulk et al. 2022, DANDI 000397)

Intraoperative recordings from a single Neuropixels 1.0 silicon probe (384 sites) inserted into human cortex during neurosurgery at Massachusetts General Hospital. Three participants were recorded without a task, in prefrontal cortex during DBS lead implantation and in anterior temporal lobe during lobectomy. This release contains only the local-field-potential band (0.5-500 Hz, 2.5 kHz), losslessly converted from the DANDI NWB files into iEEG-BIDS (BrainVision) format.

IEEG
Issues GitHub

Download this dataset

Pick a method. Large datasets skip the zip and use the streaming methods below — all resumable. Full download guide →

  1. Download archive (.zip) — 26.6 GB

    A single zip of the published version. Best for small/medium datasets.

    Download zip

  2. NEMAR CLI recommended

    Pulls the pinned version + annexed data and resumes cleanly. Install nemar-cli → 

    nemar dataset download nm000370
  3. DataLad

    Clone the dataset repo and fetch file content on demand. Docs → 

    datalad clone https://github.com/nemarDatasets/nm000370 nm000370
cd nm000370 && datalad get .
  4. git-annex

    Plain git + git-annex against the dataset repo. Docs → 

    git clone https://github.com/nemarDatasets/nm000370 nm000370
cd nm000370 && git annex get .
  5. Direct files (wget / curl / rclone)

    Every file with a stable, range-resumable URL from the manifest. Needs curl, jq, wget (or rclone/aria2c). Docs → 

    curl -s https://data.nemar.org/nm000370/v1.0.0/manifest.json | jq -r '.[].bytes_url' > urls.txt
wget -xc -i urls.txt

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

  1. NeuroScience Gateway (NSG) portal.

    NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/nm000370), and submit.
    nsgportal.org →

  2. Local processing with nemar-cli.

    Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning. 

    npm install -g nemar-cli
nemar dataset clone nm000370
cd nm000370 && nemar dataset get
  3. Just the files.

    rclone, aria2c, or any HTTPS client works against data.nemar.org/nm000370/ — the manifest carries presigned S3 URLs.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

Citations

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    Files

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    Signal viewer
    How to use the data (for agentic research) license, citation, download commands

    What it is

    Modalities
    IEEG
    Participants
    3
    Size
    26.5 GB
    Tasks
    intraop

    License and terms

    License
    CC0
    Recommended citation
    Paulk, A. C., Kfir, Y., Khanna, A. R., Mustroph, M. L., Trautmann, E. M., Soper, D. J., Stavisky, S. D., Welkenhuysen, M., Dutta, B., Shenoy, K. V., Hochberg, L. R., Richardson, R. M., Williams, Z. M., & Cash, S. S. (2026). Human intraoperative Neuropixels recordings, LF band (Paulk et al. 2022, DANDI 000397) (Version v1.0.0) [Data set]. NEMAR. https://doi.org/10.82901/nemar.nm000370
    Reference 1
    https://doi.org/10.1101/2021.06.20.449152
    Reference 2
    https://doi.org/10.5281/zenodo.5753471

    Where the bytes are

    Latest version (always current)
    https://data.nemar.org/nm000370/latest/
    This version (v1.0.0)
    https://data.nemar.org/nm000370/v1.0.0/

    How to download

    The dataset
    nemar dataset download nm000370 Clones and fetches in one step. Content under stimuli/ and derivatives/ is skipped by default because those trees can be large; add --stimuli --derivatives for the whole thing.
    A subset, one step
    nemar dataset download nm000370 --subjects sub-01,02 Also filters by --sessions, --tasks, --runs, --datatypes, --include and --exclude.
    A subset, step 1
    nemar dataset clone nm000370 Clones git-annex pointers only; fetches no file content. Creates ./nm000370.
    A subset, step 2
    cd nm000370 The get command below reads the clone's annex, so it only works from inside the clone.
    A subset, step 3
    nemar dataset get <files> Pulls the files you actually need. Skips stimuli/ and derivatives/ unless the path you ask for is under one of them.
    One small file
    https://data.nemar.org/nm000370/v1.0.0/participants.tsv A direct HTTPS fetch works for any single file.

    Assess fit without downloading

    Participants table
    https://data.nemar.org/nm000370/v1.0.0/participants.tsv
    Dataset description
    https://data.nemar.org/nm000370/v1.0.0/dataset_description.json
    Directory listing
    https://data.nemar.org/nm000370/v1.0.0/?format=json
    Catalog record
    https://api.nemar.org/datasets/nm000370